Tools to analyze PKS specificities¶

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Minowa // NRPS/PKS specificity prediction according to Minowa et al.¶

please see Minowa et al. entry in NRPS specificty predictor section.

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NRPS/PKS substrate predictor¶

NRPS/PKS substrate predictor uses a HMM-based approach to predict specificities of NRPS A-domains and PKS AT domains.

Reference:

• Khayatt, B. I., et al., 2013, PLoS ONE 8:e62136

Link:

• http://www.cmbi.ru.nl/NRPS-PKS-substrate-predictor/

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PKSIIIexplorer¶

PKSIIIexplorer uses and transductive SVM-approach to identify PKSIII enzymes in datasets Reference:

• Vijayan, M., et al., 2011, Bioinformation 6: 125-7

Link:

• http://type3pks.in/tsvm/pks3 (currently service is not available)

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Specificity prediction for Type I PKS¶

Specificity predictions are included in multiple domain identification tools. Please follow the link below.

Link:

• Tools to predict PKS and NRPS domain organizations