Generic tools



CRISPy-web

Online tool to design guideRNAs (sgRNAs) for CRISPR applications with microbes. Unlike most other CRISPR design tools, CRISPy-web allows the user to upload custom/non-model organisms genome data to screen for off-target effects. CRISPy-web can directly access antiSMASH results and use the antiSMAS-annotation to aid with the sgRNA design. CRISPy-web is based on CRISPy, a web-tool to find sgRNAs for Chinese hamster ovary (CHO-K1) cells.

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InterProScan

Interpro is a comprehensive resource on protein domains. The web tool InterProScan offers querying the Interpro database and identifying conserved protein domains in query sequences.

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MultiGeneBlast

The standalone tool MultiGeneBlast is a Blast extension that allows querying sequence databases with complete gene clusters / operons and thus allows the identification of similar pathways in other organisms.

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PatscanUI

User friendly GUI to the old, but very powerful PATSCAN utility, which is a powerful tool for pattern searching in DNA or amino acid sequences.

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